The exhibited objects in the Museum come from all over Crete. These objects show that the folk culture of Crete is characterized by an amalgam of influences in which Minoan (2000-1000 BC), Archaic (1000-500 BC) and Byzantine models prevail, especially in agriculture, stock breeding, pottery and basketry.

The " Museum of ancient Eleutherna - Homer in Crete" , was created to accommodate the results of the excavations carried out for thirty years in the ancient city of Eleutherna (Eleftherna GR: Ελεύθερνα). It is a modern building approximately 1,800 sq.m. which together with the surrounding area occupies 3 acres and remotely resembles ark that emerges from the earth, gazing Ida (Psiloritis).

The museum is located at a place called "Archontiko", around 1000m west from Fodele village and is housed in the house where according to tradition the great painter Doménikos Theotokópoulos (El Greco), was born. The exhibits are mainly photo - reproductions of his paintings and other documents related to the painter's life and work.
The house was severely damaged by the passage of time. The restoration began in 1982 with a grant from the Ministry of Culture and the considerable help of the then Minister Melina Mercouri, in collaboration with the community of Fodele. It was reconstructed according to its original design.

The Monastery of Arkádi (GR:Αρκάδι) built during the last Venetian period, it consists of a large set of fortress-like buildings. The main building included the cells, the warehouses where the agricultural products were treated and stored, the stables. In a word, it was a well-equipped little fortress where people could find refuge in times of trouble. There is an impressive church, with two naves dedicated to Saint Constantine and Saint Helen, and to Our Lord. Due to the holocaust it suffered in 1866, Arkadi has become the island's most famous monastery.

The Archaeological Museum of Archanes opened in 1993. It occupies an area of 570 square meters and it is located at the Tzami quarter in the center of the settlement. There, for the first time in Crete, the archaeological finds from a single site are exhibited. While the exterior spaces of the building were adapted to a tasteful ensemble, in resemblance with the impressive modesty of the environment and the traditional ochre and rosy colour tonations of Archanes. The interior was thus arranged as to accommodate the most modern mode of exhibition, especially attractive for the visitor.

In the heart of the city center of Heraklion, opposite the church of Agios Minas, is the Museum of traditional music, instruments, research & documentation with the characteristic title 'Thirathen'.
The Museum was founded in 2012 with its headquarters in the historic village of Krousonas, in the Municipality of Malevizi. In December 2023, it opened its doors to the public, in its new space in the center of the city of Heraklion.

The Natural History Museum of Crete is housed in the renovated former premises of the Heraklion Public Power Corporation, on Dermatas’ Bay. With an area of 3,500 m2, it is the largest exhibition of its kind in the Mediterranean, showcasing the natural environment of Crete and the wider Mediterranean area in an innovative, original way.